Elektra Beckum MCE, NM20600A-A manual Selecting a ROI, ROI database, Exporting ROIs

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MCE User’s Guide

Region of interest

8.3 Selecting a ROI

You can select a ROI from the Color display (p. 29). Select a range of nodes with the right mouse button.

The program will find the active source points that are contributing to the selected activity and calculate the ROI center and extent. The orientation of the ROI will be the mean orientation of selected currents.

After selecting a new ROI, activity weighted with it is shown in the ROI win- dow (p. 34), the time course of activity in the area is shown in the Amplitude window (p. 31), and the parameters of the ROI are shown in the ROI database (p. 35). In the Color display or Arrow display (p. 30) you can toggle between showing the selected activity and all the activity by pressing any key when the window is selected.

Warning: Region of interest may contain multiple sources whose activities are

! mixed together.

8.4ROI database

You can compare the activity of a certain brain area in different measurements and subjects by saving the ROIs in a database.

You can access the database with the ROI database window (p. 35). When you have selected the ROI corresponding to the interesting brain area, write the name of the area in the [Comment] field and press the [Save] button.

If you want to see the activity of the same area during another measurement, load (p. 12) the corresponding estimate, press down the [Show other files]but- ton, and select the area from the list.

If you compare the results of different subjects and possibly with your col- leagues, you may need to press down the [Show other subjects] button or change the user name in the [Creator] field. If there is a huge number of ROIs in the database, you can constrain the search using SQL search (p. 37).

8.5 Exporting ROIs

You can export the ROI ellipsoids to Mrilab with the [Export new file]and [Append] commands in the [Options] menu of the ROI database window (p. 38). The output files can be imported to Mrilab (see corresponding manual for details).

NM20600A-A

2004-05-17

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Contents MCE User’s Guide Copyright and Warranty Contents Index Hazard Information IntroductionReferences VersionWhat’s new? Conventions and typographyAnalyzing data Getting StartedQuitting the program Selecting the data file and pre-processing Setting the filtering and baselinesEffect of the baselines Decreasing the computing time and file sizesBad channels and projections MCE User’s Guide BEM selection Selecting the head modelPoint set selection dialog Point set selectionMin dist Creating BEM filesCalculating the estimates Loading a calculated estimate Selecting the time What is the orientation of a ROI? What is ROI?Region of interest ROI database Selecting a ROIExporting ROIs Predicting MEG waveforms Printing from the dialog PrintingSaving to an image file Saving with xgifdump command Creating Html documents Creating Html documents and Mpeg moviesCreating movies Window menus MCE windows and dialogsOptions menu Main windowMinimum norm estimate options dialog Pre-processing dialogPre-processing dialog Units Hz Remove mean MEG data dialogSelect file Full calculation dialogCalculation Batch jobs windowColor display of the estimate Color displayArrow display of the estimate Arrow displayAmplitude window with total activity Amplitude windowAmplitude scale window Amplitude scale windowRelative color mode Constant color modeColor scale window Region of interest window Things to rememberROI database ROI database windowROI list ROI searchOther controls Current ROISQL database Html Creation Dialog Html Creation DialogTime periods Movie Creation DialogWindow length Index MCE User’s Guide