Elektra Beckum NM20600A-A, MCE manual Selecting the data file and pre-processing

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Selecting the data file and pre-processing

MCE User’s Guide

3 Selecting the data file and pre-processing

Select the MEG data file by pressing the [File] button of main window (p. 22). Select the data file from the dialog. If the file has several data sets, a selection dia- log pops up and you can select the correct data set.

When the you have selected the data, the pre-processing dialog (see Figure 2) will open.

Figure 2 The pre-processing dialog

3.1 Setting the filtering and baselines

Because the MEG signals are mainly concentrated to the lower frequencies, you can increase the signal-to-noise ratio with an low-pass filter. Select the [Lowpass filter]toggle and set appropriate cutoff frequency and transition width of the filter. After changing the numeric values, press Enter or the Tab key to update the value. You can view the effect on a single channel by pressing the [Channel] toggle or the filter response with the [Impulse response] and [Freq. response] buttons. You can zoom into the preview window with the left mouse button and revert to automatic scaling with the [rescale] button.

Because most of the channels usually have a non-zero DC-level, you should select

a[Baseline] toggle and select a time period where there should be no real evoked responses, typically before the stimulus.

If you are analyzing a long period or the data otherwise includes strong artificial slow drifts, you can select a [Detrend baseline] period after the evoked response. This is usually a safer way of getting rid of the drifts than, for example, applying high-pass filter.

The de-trend baseline actually fits a line to the values in the two baselines and sub- tracts it form the data (see Figure 3).

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2004-05-17

NM20600A-A

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Contents MCE User’s Guide Copyright and Warranty Contents Index Introduction Hazard InformationVersion What’s new?Conventions and typography ReferencesQuitting the program Getting StartedAnalyzing data Setting the filtering and baselines Selecting the data file and pre-processingDecreasing the computing time and file sizes Effect of the baselinesBad channels and projections MCE User’s Guide Selecting the head model BEM selectionPoint set selection Point set selection dialogCreating BEM files Min distCalculating the estimates Loading a calculated estimate Selecting the time Region of interest What is ROI?What is the orientation of a ROI? Exporting ROIs Selecting a ROIROI database Predicting MEG waveforms Saving to an image file PrintingPrinting from the dialog Saving with xgifdump command Creating Html documents and Mpeg movies Creating Html documentsCreating movies MCE windows and dialogs Window menusMain window Options menuPre-processing dialog Minimum norm estimate options dialogPre-processing dialog Units Hz MEG data dialog Remove meanFull calculation dialog Select fileBatch jobs window CalculationColor display Color display of the estimateArrow display Arrow display of the estimateAmplitude window Amplitude window with total activityAmplitude scale window Amplitude scale windowColor scale window Constant color modeRelative color mode Things to remember Region of interest windowROI database window ROI databaseROI search ROI listSQL database Current ROIOther controls Html Creation Dialog Html Creation DialogMovie Creation Dialog Time periodsWindow length Index MCE User’s Guide