HP XC System 2.x Software 3 Developing Applications

2.3	Launching and Managing Jobs Quick Start .........................................	2-7
2.3.1	Introduction ......................................................................	2-7
2.3.2	Getting Information About Queues ............................................	2-7
2.3.3	Getting Information About Resources .........................................	2-7
2.3.4	Getting Information About the System’s Partitions ...........................	2-8
2.3.5	Launching Jobs ..................................................................	2-8
2.3.5.1	Submitting a Serial Job ....................................................	2-8
2.3.5.2	Submitting a Non-MPI Parallel Job .......................................	2-9
2.3.5.3	Submitting an MPI Job .....................................................	2-10
2.3.5.4	Submitting a Batch Job or Job Script .....................................	2-11
2.3.6	Getting Information About Your Jobs .........................................	2-12
2.3.7	Stopping and Suspending Jobs .................................................	2-12
2.3.8	Resuming Suspended Jobs ......................................................	2-12
2.4	Performing Other Common User Tasks .............................................	2-12
2.4.1	Determining the LSF Cluster Name and LSF Execution Host ...............	2-12
2.4.2	Installing Third-Party Software ................................................	2-12
2.5	Getting System Help and Information ..............................................	2-12

3 Developing Applications

3.1	Overview ..............................................................................	3-1
3.2	Using Compilers ......................................................................	3-2
3.2.1	Standard Linux Compilers ......................................................	3-2
3.2.2	Intel Compilers ...................................................................	3-2
3.2.3	PGI Compilers ...................................................................	3-2
3.2.4	Pathscale Compilers .............................................................	3-3
3.2.5	MPI Compiler ....................................................................	3-3
3.3	Checking Nodes and Partitions Before Running Jobs .............................	3-3
3.4	Interrupting a Job .....................................................................	3-3
3.5	Setting Debugging Options ..........................................................	3-3
3.6	Developing Serial Applications .....................................................	3-3
3.6.1	Serial Application Build Environment .........................................	3-4
3.6.1.1	Using MLIB in Serial Applications .......................................	3-4
3.6.2	Building Serial Applications ....................................................	3-4
3.6.2.1	Compiling and Linking Serial Applications ..............................	3-4
3.7	Developing Parallel Applications ...................................................	3-4
3.7.1	Parallel Application Build Environment .......................................	3-5
3.7.1.1	Modulefiles .................................................................	3-5
3.7.1.2	HP-MPI ......................................................................	3-5
3.7.1.3	OpenMP .....................................................................	3-5
3.7.1.4	Pthreads .....................................................................	3-5
3.7.1.5	Quadrics SHMEM ..........................................................	3-6
3.7.1.6	MLIB Math Library ........................................................	3-6
3.7.1.7	MPI Library .................................................................	3-6
3.7.1.8	Intel Fortran and C/C++Compilers ........................................	3-7
3.7.1.9	PGI Fortran and C/C++ Compilers .......................................	3-7
3.7.1.10	GNU C and C++ Compilers ...............................................	3-7
3.7.1.11	GNU Parallel Make ........................................................	3-7
3.7.1.12	MKL Library ................................................................	3-7
3.7.1.13	ACML Library ..............................................................	3-7
3.7.1.14	Other Libraries ..............................................................	3-7
3.7.1.15	Reserved Symbols and Names ............................................	3-8
3.7.2	Building Parallel Applications ..................................................	3-8
3.7.2.1	Compiling and Linking Non-MPI Applications .........................	3-8

iv Contents