Compaq mar345 manual ItemDescription Title, Directory, Image root, Scan mode, Output format

Page 14

mar345 Program Manual

1 4

______________________________________________________________________________________

The Change Parameters window is used to program data collection parameters. The window comes in 4 slightly different flavours, depending on the button choice in the Collect Menu:

Single Data Set

Multiple Data Sets

Index Crystal

MAD Data

The difference is, that in Multiple Data Sets one can program up to 64 data sets with the full range of parameters. The amount of data sets that are offered for programming can be controlled by the configuration file (entry SETS).

Index Crystal is a special way of collecting data with a ϕ movement inbetween each image. This ϕ movement is denominated "ϕ increment" and serves the purpose to collect a small number of images at different positions in ϕ .To collect 2 images that are 90 degrees away from eachother with a ϕ oscillation of 1.0 degree for each image one will have to give an increment of 89.0 degrees.

MAD Data is a special way of collecting data with anomalous signals. In this mode, a number of images is collected, then the ϕ axis moves forward and collects the same number of images in the equivalent position 180 degrees away.

Otherwise the items displayed in the window are as follows:

_______________________________________________________________________

ItemDescription

________________________________________________________________________

Title

Single Data Set, Multiple Data Sets or Index Crystal.

Directory

Directory where the images will be written to.

Image root

Name root of image files.

Scan mode

Choice of image plate diameter to be scanned (345, 300,

 

240 or 180mm) and pixelsize used (0.1mm or 0.15mm)

Output format

Usually only 1 choice: mar345. This format features a very

 

efficient image compression that requires approx. 70% less

 

disk space than uncompressed data.

Collect mode

Time controlled or X−ray dose controlled ϕ movement.

 

The latter one should be used on X−ray sources with variable

X−ray flux (synchrotrons).

________________________________________________________________________

Image 14
Contents Mar research Mar345 Program Manual Version February 24 All Rights ReservedContents Environment IntroductionComputer Requirements Command Line Running mar345Input Files Output FilesMar.spy Basic Concepts and RulesMar.log Mar.lpStarting Up Menu Bar User InterfaceMain Window Menu Bar Windows SubmenuScanner Status Area Scanner Command Area Editing Data Collection Parameters ItemDescription Title Scan modeCollect mode DirectoryExp. time ItemDescription First image noNo. of images OscillationsWavelength variable Loading and Saving Data Collection Parameters Moving Distance and Phi Starting Data Collection Stopping Data CollectionShutter Timer Single ScanGetting Help Hardware Status14 X−ray Setup Errors and Warnings Image Display Display WindowColors Options SubmenuFiles Show/Hide statisticsTurn On/Off 3D−plot Reset colorsDo not/Keep color scales Next imageImage Area Mar345 Program Manual Load Buttons Work AreaInformation Areas Zoom ButtonsBlue scales Window TitleColors Window RainbowMin MaxMessage area Cross−Section WindowNo. of peaks Upper horizontal axis Moved using the right mouse buttonVertical axis Lower horizontal axisData Collection StrategiesImageroot.SUMMARY Checking ParametersEnd of Data Collection Imageroot.htmlMessage TroubleshootingNo. Description ReasonTabel from previous 1101 Appendix Configuration File Calibration Files