Compaq mar345 manual Introduction, Computer Requirements, Environment

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mar345 Program Manual

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1. Introduction

The program mar345 is a fully menu driven graphical user interface (GUI) for collecting and displaying images on a mar345 imaging plate system.

The program is provided as binary executable for several computer platforms and operating systems:

Silicon Graphics:

IRIX 5.x, 6.x

Digital:

Compaq Tru Unix 4.x, 5.x

Linux:

RedHat 5.x, 6.x, SuSE 6.x

1.1 Computer Requirements

Motif 1.2.x shared libraries (except Linux).

8/16/24/32−bit colors X−windows terminal with 1280x1024 pixels.

Standard Helvetica and Symbol fonts.

96 MB RAM memory or more.

1.2 Environment

The program relies on definitions of the following environment variables:

MARTABLEDIR

Location of the scanner specific calibration files mar2300.XXX

 

 

and mar3450.XXX and the corresponding configuration file

MAR_SCANNER_NO

config.XXX (where XXX = MAR_SCANNER_NO ).

Three digit serial number, e.g. 049.

MARLOGDIR

Location of the log output files.

MARHELPDIR

Location of interactive help files.

The program relies on the correct network setup, i.e. the mar345 scanner must be accessible by ping and telnet with IP−address 192.0.2.1.

For a description of the setup of the mar345 software suite, see the "mar345 Installation Guide".

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Contents Mar research Mar345 Program Manual Version February 24 All Rights ReservedContents Computer Requirements IntroductionEnvironment Command Line Running mar345Input Files Output FilesBasic Concepts and Rules Mar.logMar.spy Mar.lpStarting Up Main Window User InterfaceMenu Bar Menu Bar Windows SubmenuScanner Status Area Scanner Command Area Editing Data Collection Parameters Scan mode Collect modeItemDescription Title DirectoryItemDescription First image no No. of imagesExp. time OscillationsWavelength variable Loading and Saving Data Collection Parameters Moving Distance and Phi Starting Data Collection Stopping Data CollectionShutter Timer Single ScanGetting Help Hardware Status14 X−ray Setup Errors and Warnings Image Display Display WindowOptions Submenu FilesColors Show/Hide statisticsReset colors Do not/Keep color scalesTurn On/Off 3D−plot Next imageImage Area Mar345 Program Manual Work Area Information AreasLoad Buttons Zoom ButtonsWindow Title Colors WindowBlue scales RainbowMin MaxNo. of peaks Cross−Section WindowMessage area Moved using the right mouse button Vertical axisUpper horizontal axis Lower horizontal axisData Collection StrategiesChecking Parameters End of Data CollectionImageroot.SUMMARY Imageroot.htmlTroubleshooting No. DescriptionMessage ReasonTabel from previous 1101 Appendix Configuration File Calibration Files