Compaq mar345 manual Starting Up

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mar345 Program Manual

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2.5 Starting Up

Create a new window for running the program and type: "mar345". Do not run the program in the background and do not use this window for other purposes. The program will send important output to the window and you don’t want to miss it.

At start up, the program will tell you something like:

=============================================================

Program

:

mar345

 

Version

:

2.0.8 (Feb 16

2000)

Scanner no. :

049

 

Scanner mode:

345 mm @ 0.15

mm

Started on

:

Wed Feb 16 15:09:08 2000

LOG

file is:

/home/mar345/log/log/mar.log.58

SPY

file is:

/home/mar345/log/spy/mar.spy.58

STAT file is:

/home/mar345/log/lp/mar.lp.58

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It will also tell you if it is able to talk to the scanner. If environment variables are not set you will be notified. Next, three windows will be created and automatically placed on the screen: a startup window, the mar345 main window and an empty image display window.

If the scanner is not turned on at all, by invoking program mar345 on the command line, you will not get any feed back. This is because the program tries to open a network connection to the scanner and the program will sit there and wait until the scanner starts talking to it.

When the scanner is turned on, the scanner controller will start very quickly basic network services, so a ping to the address of the scanner (usually 192.0.2.1) will work within 10 seconds after turning the scanner on. However, before starting communication with the program mar345, the scanner must do first some initialization, i.e. drive the scanning head to its default position (scan mode 2300) and lock the plate. Only when the plate is successfully locked ("cling!") program mar345 can start talking to the scanner. You may, however, start the program first and then turn on the scanner. The program really waits until a connection can be established.

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Contents Mar research Mar345 Program Manual Version February 24 All Rights ReservedContents Environment IntroductionComputer Requirements Command Line Running mar345Input Files Output FilesBasic Concepts and Rules Mar.logMar.spy Mar.lpStarting Up Menu Bar User InterfaceMain Window Menu Bar Windows SubmenuScanner Status Area Scanner Command Area Editing Data Collection Parameters Scan mode Collect modeItemDescription Title DirectoryItemDescription First image no No. of imagesExp. time OscillationsWavelength variable Loading and Saving Data Collection Parameters Moving Distance and Phi Starting Data Collection Stopping Data CollectionShutter Timer Single ScanGetting Help Hardware Status14 X−ray Setup Errors and Warnings Image Display Display WindowOptions Submenu FilesColors Show/Hide statisticsReset colors Do not/Keep color scalesTurn On/Off 3D−plot Next imageImage Area Mar345 Program Manual Work Area Information AreasLoad Buttons Zoom ButtonsWindow Title Colors WindowBlue scales RainbowMin MaxMessage area Cross−Section WindowNo. of peaks Moved using the right mouse button Vertical axisUpper horizontal axis Lower horizontal axisData Collection StrategiesChecking Parameters End of Data CollectionImageroot.SUMMARY Imageroot.htmlTroubleshooting No. DescriptionMessage ReasonTabel from previous 1101 Appendix Configuration File Calibration Files