Compaq mar345 manual 14 X−ray Setup

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mar345 Program Manual

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3.14 X−ray Setup

When producing images during data collection many parameters concerning the current experiment are automatically written into the output image headers, so this information can be retrieved later on. This is most relevant for parameters like the distance and the goniometer positions. It might, however, be useful to add also some information about the state of the X−ray source. Unfortunately, the program mar345 does not have knowledge about the generator and collimator settings, so this information must be entered manually. For this purpose, open the mar345−X−ray Setup window. This window can be popped up manually from the main window menubar or by pressing the F3 key. All information given here is really not essential but it may help later on to track down problems during data processing.

The center of diffraction is supposed to be a physical constant (for one data set) and is valid for all scan modes, regardless if working at 0.15 or 0.10 mm pixelsize. This is why the center should not be entered in absolute pixels or millimeters referring to an origin in the lower left corner but as a deviation from the center of the image plate. These values should be given in mm, not in pixels, and can become negative. Negative x deviation means that the center of diffraction is left of the IP−center. A negative y deviation would be underneath the IP−center .

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Contents Mar research Mar345 Program Manual Version February 24 All Rights ReservedContents Computer Requirements IntroductionEnvironment Command Line Running mar345Input Files Output FilesMar.spy Basic Concepts and RulesMar.log Mar.lpStarting Up Main Window User InterfaceMenu Bar Menu Bar Windows SubmenuScanner Status Area Scanner Command Area Editing Data Collection Parameters ItemDescription Title Scan modeCollect mode DirectoryExp. time ItemDescription First image noNo. of images OscillationsWavelength variable Loading and Saving Data Collection Parameters Moving Distance and Phi Starting Data Collection Stopping Data CollectionShutter Timer Single ScanGetting Help Hardware Status14 X−ray Setup Errors and Warnings Image Display Display WindowColors Options SubmenuFiles Show/Hide statisticsTurn On/Off 3D−plot Reset colorsDo not/Keep color scales Next imageImage Area Mar345 Program Manual Load Buttons Work AreaInformation Areas Zoom ButtonsBlue scales Window TitleColors Window RainbowMin MaxNo. of peaks Cross−Section WindowMessage area Upper horizontal axis Moved using the right mouse buttonVertical axis Lower horizontal axisData Collection StrategiesImageroot.SUMMARY Checking ParametersEnd of Data Collection Imageroot.htmlMessage TroubleshootingNo. Description ReasonTabel from previous 1101 Appendix Configuration File Calibration Files