HP XC System 3.x Software Working Interactively Within an LSF-HPCAllocation, lsf, lsf, ssh, srun, bsub, srun, Note, Ncpus, Error, -srun, Status, mpirun, n[1-4], Jobstep, Jobname

$ sacct -j 123
Jobstep	Jobname	Partition	Ncpus	Status	Error
----------	------------------	---------- -------		----------	-----
123	hptclsf@99	lsf	8	CANCELLED	0
123.0	hptclsf@99	lsf	0	COMPLETED	0

The status of a completed job handled by LSF-HPC is always CANCELLED because LSF-HPC destroys the allocation that it creates for the job after the user job completes. LSF-HPC performs the following steps:

•Creates the allocation in SLURM.•Submits the user job to SLURM.•Waits for the user job to finish.•Cancels the allocation in SLURM.

The example shown above had three entries for a completed job. There are at least two entries; the number of entries depends on the construction of the user job:

•The first entry represents the allocation created by LSF-HPC.

•The second entry, SLURM job step 0, represents the user job that LSF-HPC submits to SLURM.

•Further entries represent srun or mpirun -sruncommands invoked by the user job.

Working Interactively Within an LSF-HPC Allocation

The best way to work interactively on HP XC is to separate the allocation from the interactive work. In one terminal, submit your allocation request to LSF-HPC with an interactive shell as the job. For example:

$ bsub -I -n4 -ext "SLURM[nodes=4]" /bin/bash

Job <124> is submitted to the default queue <interactive>. <<Waiting for dispatch...>>

<<Starting on lsfhost.localdomain>>

The bsub command requests 4 nodes and runs /bin/bash on the first allocated node. If resources are not immediately available, the terminal pauses at <<Waiting for dispatch...>>. When <<Starting on displays, the resources are allocated and /bin/bash is running.

To gather information about this allocation, run the following command in this first terminal (note there is no prompt from the /bin/bash process):

$ bjobs -l 124 grep slurmdate and time stamp: slurm_id=150;ncpus=8;slurm_alloc=n[1-4];

LSF allocated nodes n[1-4]for this job. The SLURM JOBID is 150 for this allocation.

Begin your work in another terminal. Use ssh to login to one of the compute nodes. If you want to run tasks in parallel, use the srun command with the --jobidoption to specify the SLURM JOBID. For example, to run the hostname command on all nodes in the allocation:

$ srun --jobid=150 hostname

You can simplify this by first setting the SLURM_JOBID environment variable to the SLURM JOBID in the environment, as follows:

$ export SLURM_JOBID=150 $ srun hostname

Note

84 Using LSF