HP XC System 4.x Software 3 Configuring Your Environment with Modulefiles, 4 Developing Applications, 5 Submitting Jobs

	2.3.1 Determining the LSF Cluster Name and the LSF Execution Host..........................................	32
2.4	Getting System Help and Information............................................................................................	32
3 Configuring Your Environment with Modulefiles.......................................................		33
3.1	Overview of Modules......................................................................................................................	33
3.2 Supplied Modulefiles......................................................................................................................		34
3.3	Modulefiles Automatically Loaded on the System.........................................................................	36
3.4	Viewing Available Modulefiles.......................................................................................................	36
3.5	Viewing Loaded Modulefiles..........................................................................................................	36
3.6	Loading a Modulefile......................................................................................................................	36
	3.6.1 Loading a Modulefile for the Current Session........................................................................	36
	3.6.2 Automatically Loading a Modulefile at Login........................................................................	36
3.7 Unloading a Modulefile..................................................................................................................		37
3.8	Viewing Modulefile-Specific Help..................................................................................................	37
3.9	Modulefile Conflicts........................................................................................................................	37
3.10 Creating a Modulefile....................................................................................................................		38
4 Developing Applications.............................................................................................		39
4.1	Application Development Environment Overview........................................................................	39
4.2	Compilers........................................................................................................................................	40
	4.2.1 MPI Compiler..........................................................................................................................	40
4.3	Examining Nodes and Partitions Before Running Jobs..................................................................	41
4.4	Interrupting a Job............................................................................................................................	41
4.5	Setting Debugging Options.............................................................................................................	41
4.6	Developing Serial Applications.......................................................................................................	41
	4.6.1 Serial Application Build Environment....................................................................................	42
	4.6.2 Building Serial Applications...................................................................................................	42
	4.6.2.1 Compiling and Linking Serial Applications...................................................................	42
4.7 Developing Parallel Applications....................................................................................................		42
	4.7.1 Parallel Application Build Environment.................................................................................	42
	4.7.1.1 Modulefiles......................................................................................................................	43
	4.7.1.2 HP-MPI............................................................................................................................	43
	4.7.1.3 OpenMP..........................................................................................................................	43
	4.7.1.4 Pthreads...........................................................................................................................	43
	4.7.1.5 Quadrics SHMEM...........................................................................................................	43
	4.7.1.6 MPI Library.....................................................................................................................	44
	4.7.1.7 Intel Fortran and C/C++Compilers..................................................................................	44
	4.7.1.8 PGI Fortran and C/C++ Compilers..................................................................................	44
	4.7.1.9 GNU C and C++ Compilers.............................................................................................	44
	4.7.1.10 Pathscale Compilers......................................................................................................	44
	4.7.1.11 GNU Parallel Make.......................................................................................................	44
	4.7.1.12 MKL Library..................................................................................................................	45
	4.7.1.13 ACML Library...............................................................................................................	45
	4.7.1.14 Other Libraries..............................................................................................................	45
	4.7.2 Building Parallel Applications................................................................................................	45
	4.7.2.1 Compiling and Linking Non-MPI Applications.............................................................	45
	4.7.2.2 Compiling and Linking HP-MPI Applications...............................................................	45
	4.7.2.3 Examples of Compiling and Linking HP-MPI Applications..........................................	45
4.8	Developing Libraries.......................................................................................................................	46
	4.8.1 Designing Libraries for the CP4000 Platform.........................................................................	46
5 Submitting Jobs............................................................................................................		49
5.1	Overview of Job Submission...........................................................................................................	49

4Table of Contents