$ sinfo

 

 

 

 

 

PARTITION AVAIL

TIMELIMIT

NODES

STATE

NODELIST

lsf

up

infinite

2

idle

n[46,48]

According to the information returned about this HP XC system, LSF has two nodes available for use, n46 and n48.

Determine the address of your monitor's display server, as shown at the beginning of “Running an X Terminal Session from a Remote Node”. You can start an X terminal session using this address information in a bsub command with the appropriate options. For example:

$ bsub -n4 -Ip srun -n1 xterm -display 192.0.2.134:0.0 Job <159> is submitted to default queue <normal>. <<Waiting for dispatch ...>>

<<Starting on lsfhost.localdomain>>

The options used in this command are:

-n4allocate 4 cores
-Ipinteract with the X terminal session
srun -n1run the job on 1 core

xterm

the job is an X terminal session

-display <address>

monitor's display server address

A remote X terminal session appears on your monitor. The X terminal session job is launched from node n47, which is the LSF execution host node. You can view this job using LSF and SLURM commands. For example:

$ sinfo

 

 

 

 

 

 

 

 

 

PARTITION AVAIL TIMELIMIT NODES

STATE NODELIST

 

 

 

lsf

up

infinite

2

alloc n[46,48]

 

 

 

$ squeue

 

 

 

 

 

 

 

 

JOBID

PARTITION

NAME

USER

ST

TIME

NODES NODELIST

117

lsf

 

hptclsf@

username R

0:25

2

n[46,48]

$ bjobs

 

 

 

 

 

 

 

 

 

JOBID

USER

STAT QUEUE

FROM_HOST EXEC_HOST JOB_NAME

SUBMIT_TIME

119

lsfadmi RUN

norma

n48

4*n47

*8.136:0.0 date and time

You can now run some jobs from the X terminal session that you started and make use of the full allocation within the LSF node allocation. For example:

$ srun -n4 hostname n46

n48

n46

n48

$ srun -n2 hostname n46

n48

Exiting from the X terminal session ends the LSF job.

11.3 Using the GNU Parallel Make Capability

By default, the make command invokes the GNU make program. GNU make has the ability to make independent targets concurrently. For example, if building a program requires compiling 10 source files, and the compilations can be done independently, make can manage multiple compilations at once — the number of jobs is user selectable. More precisely, each target's rules are run normally (sequentially within the rule). Typically the rules for an object file target is a single compilation line, so it is common to talk about concurrent compilations, though GNU make is more general.

On non-cluster platforms or command nodes, matching concurrency to the number of cores often works well. It also often works well to specify a few more jobs than cores so that one job can

11.3 Using the GNU Parallel Make Capability 109