Chapter 3 Peak Detection and Labeling
The following table lists the default settings in the .SET files provided for spectra.
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| Parameter | Spectrum | Linear | PSD | |
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| MARINER.S | VOYAGER | |||
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| VOYAGER | VOYAGER | ||
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| ET | LINEAR.SET | REFLECTOR | PSD.SET |
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| .SET |
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| Basic Settings (spectrum data) |
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| %Base Peak Intensity | 0.25 | 0 | 0 | 0 |
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| %Max Peak Area | 0.25 | 2 | 2 | 2 |
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| Use Resolution Dependent | ON | ON | ON | OFF |
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| Mass Resolution | 5,000 | 2,000 | 10,000 | N/A | |
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| Peak Processing |
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| Integration Baseline Setting | ||||
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| Centroid% | 50 | 50 | 50 | 50 |
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| Max. Charge State | 6 | 1 | 1 | 1 |
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| Max. Isotopes# | 6 | 5 | 10 | 5 |
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| Min. Intensity% | 5 | 10 | 10 | 10 |
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| Max. Intensity% | 100 | 100 | 100 | 100 |
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