Chapter 3 Peak Detection and Labeling

Inserted peaks are:

• Removed from the list when you close the data file, reprocess the data, or set peak detection parameters so that the inserted peak is no longer detected.

• Assigned a charge state of 0 to indicate the charge state is unknown.

 

 

 

 

 

CAUTION

 

 

 

 

A zero value in the Spec Peak list does not indicate a

 

 

 

 

charge state of zero. It indicates that the software

 

 

 

 

could not determine the charge state.

 

 

 

 

 

 

3.3.3 Saving the Peak List

 

 

3

 

 

 

 

 

 

Saving as a You can save the contents of the chromatogram and spectrum

 

 

 

 

stand-alone

peak lists as stand-alone peak list files (.PKT).

 

 

.PKT file

Stand-alone peak list files can be used in other applications

 

 

 

such as Microsoft Notepad Editor or Microsoft Excel.

 

 

 

 

 

 

To save a peak list as a stand-alone .PKT file for use in other

 

 

 

applications:

 

 

 

1.

Click the trace of interest.

 

 

 

2.

Display the peak list of interest in the Output window by

 

 

 

 

clicking the Chro Peak List or the Spec Peak List tab.

 

 

 

3.

Right-click the Output window, then select Save As.

 

 

 

 

The Save Peak Table As dialog box is displayed.

 

 

 

4.

Select a directory and type a file name.

 

 

 

5.

Click Save.

 

 

 

 

The software automatically assigns a .PKT extension

 

 

 

 

and saves the peak list as a tab-delimited text file.

3-40 Applied Biosystems