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Sequence Control Panel, Mariner, automatic calibration settings (reference masses) for 5-27

Sequence Control Panel, Voyager, automatic calibration settings (reference masses) for 5-28

SET files applying 1-20

applying when opening data file 2-4contents 1-18

creating for Mariner Sequence Control Panel 5-27

creating for Voyager Sequence Control Panel 5-28,5-29

customizing 1-19defaults 1-19,1-23description 1-7extracting from DAT 1-37modifying 1-19restoring 1-20

saving for use with other data files 1-19

saving for Voyager Sequence Control Panel 5-33

viewing contents of 1-18Settings

see also Graphic settings see also Processing settings see also SET files automatically saved when data file

closed 1-18restoring and saving 1-20

Signal intensity, summing for one mass 5-2

Signal-to-noise ratio algorithm 6-23calculating 6-23improving 5-2,7-2,7-3

Single-charge conversion description 5-59example 5-61

multiply-charged peaks seen after conversion 5-62

procedure 5-59troubleshooting 5-62

Single-point calibration, see Calibrating mass

SM

in chromatogram header 2-30,4-19in spectrum header 2-32,5-44

Smoothing chromatogram 4-17setting method performed by

toolbar 5-42

spectrum 5-42spectrum, default 5-43

Software, starting and exiting 1-3Sorting the peak list 3-42

SPC file

converting from profile to centroid 1-33

converting to DAT 1-30results, saving, opening, and

deleting 2-40Voyager, not supported 1-6

Spec peak list, Output window 1-15 SPEC window, see Spectrum window Spectra

accumulating 4-22adding/subtracting from different

data files 5-64adding/subtracting within a data

file 4-20averaging 4-22

combining (Mariner data only) 5-2,5-4,7-4

saturated, correcting 5-62single-charge conversion 5-59subtracting 4-20

Index-24 Applied Biosystems